BIOMEDICAL INFORMATICS CENTER OF ICMR

National Institute of Cholerae & Enteric Disease

P33 CIT Road,  SCHEME - XM, Kolkata 700 010

 

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In our Biomedical Informatics center we have server and Desktop computers with printers and scanner.

Specifications of the Equipment

Server: XEON 3.2 GHz dual processor LINUX based Server and 2 GB memory with 5X72 GB Hard Disk.

Desktop computers:

Intel Pentium D 830 Dual Core Processor 2.8 GHz with 1 MB L2 cache Memory.

Memory (RAM): 1280 MB 400 MHz DDR2 RAM.

Hard Disk Drive: 160 GB Serial ATA HDD (7200 RPM).

Monitor: 43cm (17") SVGA Digital Color Monitor (Support1024 x 768 NI Resolutions).

Combo Drive: 16X10X40 CD R/W and 12X DVD

We have one HP Laserjet printer (HP 3800) 

We have one HP scanner with auto feeder (HP 8390)

 

Software Facilities

We have GCG Packages and Discovery Studio (Life Science and Simulation) of accelrys

 Discovery Studio (Life Science and Simulation): It has lots of software Product.

The products are:

  • Visualization Software
    • Discovery Studio Visulizer Pro
    • DS Visulizer
  • Protein Modeling Software
    • Modeler
    • Protein Families
    • Protein Similarity Search
  • Simulations
    • CHARMm
    • CHARMm Lite
    • CCF Advanced Class II Forcefiled
  • Analysis Software
    •  Biopolymer
    • Analysis
    • Protein Health
  • Receptor-Ligand Intreactions
    • LigandFit
    • LigandFit/CAP
    • LigandScore
    • Ludi
    • Ludi\CAP

 CGC packages also has lots of sequencing software

The products are:

  • Sequence Acquisition

  • Sequencing Project Assembly Using SeqMerge

  • Primary Nucleic Acid Analysis

  • Pairwise Comparison: Compare/DotPlot and Scoring Matrices

  • Pairwise Alignment: Gap, BestFit, and FrameAlign

  • Database Similarity Search: BLAST and Fasta

  • Multiple Sequence Alignment and Phylogeny: ClustalW+ and PAUP

  • Pattern Finding: FindPatterns, Motifs, HMMERPfam, and MEME/MotifSearch

  • Profile Hidden Markov Model: HMMERBuild, HMMERCalibrate, and HMMERSearch

  • Nucleic Acid Secondary Structure Prediction: MFOLD and PlotFold.

 

BIOMEDICAL INFORMATICS CENTER OF ICMR, NICED, KOLKATA